PlantPromoterDB promoter information of AT3G10850.1
Summary of Gene (AT3G10850.1)
|
Overview
|
Focused view (chromosome 3: 3400522-3399323)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G10850.1 5'->3' (-) Promoter sequence AT3G10860.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G10850.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 20 | - | 3399573 | -51 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 3399572 | -50 |
| TSS clone | A | clone | - | 3399569 | -47 |
| TSS clone | C | clone | - | 3399566 | -44 |
| TSS clone | G | clone | - | 3399564 | -42 |
| TSS clone | G | clone | - | 3399552 | -30 |
| TSS clone | G | clone | - | 3399550 | -28 |
| TSS clone | A | clone | - | 3399548 | -26 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGGTTCGATCCGGTTTG | - | 3399620 | 3399637 | -98 | -115 | |||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTGAACCGGAT | - | 3399668 | 3399678 | -146 | -156 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTCCGGTTCA | - | 3399692 | 3399701 | -170 | -179 | |||
| AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG480 | CCGGTTCA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 79 | + | 3399772 | AT3G10860.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 3399739 | AT3G10860.1 |
| TSS clone | G | clone | + | 3399744 | AT3G10860.1 |
| TSS clone | T | clone | + | 3399771 | AT3G10860.1 |
| TSS clone | T | clone | + | 3399773 | AT3G10860.1 |
| TSS clone | G | clone | + | 3399774 | AT3G10860.1 |
| TSS clone | T | clone | + | 3399783 | AT3G10860.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACGTGGAA | + | 3399506 | 3399513 | AT3G10860.1 | ||||
| AtREG627 | ACGTGGAA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | TTCGGTTTAC | + | 3399609 | 3399618 | AT3G10860.1 | ||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG519 | CGGTTTAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CAAACCGGATCGAACCGA | + | 3399620 | 3399637 | AT3G10860.1 | ||||
| AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATCCGGTTCAA | + | 3399668 | 3399678 | AT3G10860.1 | ||||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG480 | CCGGTTCA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGAACCGGAA | + | 3399692 | 3399701 | AT3G10860.1 | ||||
| AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||