PlantPromoterDB promoter information of AT3G10974.1
Summary of Gene (AT3G10974.1)
|
Overview
|
Focused view (chromosome 3: 3436188-3437387)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G10974.1 5'->3' (+) Promoter sequence AT3G10970.1
AT3G10970.2 AT3G10970.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G10974.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 8 | - | 3436236 | AT3G10970.1, AT3G10970.2, AT3G10970.3 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 3436279 | AT3G10970.1, AT3G10970.2, AT3G10970.3 |
| TSS clone | T | clone | - | 3436241 | AT3G10970.1, AT3G10970.2, AT3G10970.3 |
| TSS clone | A | clone | - | 3436236 | AT3G10970.1, AT3G10970.2, AT3G10970.3 |
| TSS clone | T | clone | - | 3436233 | AT3G10970.1, AT3G10970.2, AT3G10970.3 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTTCTCTCTCTCTC | - | 3436240 | 3436254 | AT3G10970.1, AT3G10970.2, AT3G10970.3 | |
| Y Patch | CTCTCTTTC | - | 3436256 | 3436264 | AT3G10970.1, AT3G10970.2, AT3G10970.3 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAACGGCA | - | 3436302 | 3436310 | AT3G10970.1, AT3G10970.2, AT3G10970.3 | ||||
| AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG500 | AAACGGCA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AAAACGACGT | - | 3436332 | 3436341 | AT3G10970.1, AT3G10970.2, AT3G10970.3 | ||||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG493 | AACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| REG | TGGCCCATTAA | - | 3436462 | 3436472 | AT3G10970.1, AT3G10970.2, AT3G10970.3 | ||||
| AtREG490 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG396 | CCCATTAA | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| REG | GGCCTATT | - | 3436487 | 3436494 | AT3G10970.1, AT3G10970.2, AT3G10970.3 | ||||
| AtREG424 | GGCCTATT | PPDB Motif | PLACE Motif | ||||||
| REG | TTAGCCCACTA | - | 3436515 | 3436525 | AT3G10970.1, AT3G10970.2, AT3G10970.3 | ||||
| AtREG571 | TTAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG510 | AGCCCACT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG532 | GCCCACTA | PPDB Motif | GCCCA | PLACE Motif | |||||