PlantPromoterDB promoter information of AT3G11200.2
Summary of Gene (AT3G11200.2)
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Overview
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Focused view (chromosome 3: 3511195-3509996)
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Genome position
from initiation codon AT3G11210.1 TSS from cDNA TSS information AT3G11200.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G11200.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 3510596 | -401 |
| TSS clone | T | clone | - | 3510589 | -394 |
| TSS clone | T | clone | - | 3510575 | -380 |
| TSS clone | T | clone | - | 3510569 | -374 |
| TSS clone peak | T | clone | - | 3510547 | -352 |
| TSS clone | T | clone | - | 3510537 | -342 |
| TSS clone | T | clone | - | 3510501 | -306 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCTCTCTCTTC | - | 3510515 | 3510528 | -320 | -333 |
| Y Patch | TCTCCTTC | - | 3510540 | 3510547 | -345 | -352 |
| Y Patch | CTTCTCTCC | - | 3510549 | 3510557 | -354 | -362 |
| Y Patch | TTTCTTCTCCTTCT | - | 3510569 | 3510582 | -374 | -387 |
| Y Patch | TCTCTCTT | - | 3510586 | 3510593 | -391 | -398 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGGGCCCAACT | - | 3510699 | 3510709 | -504 | -514 | |||
| AtREG400 | AGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG392 | GGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG449 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG607 | GCCCAACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATTTGGGCCTAAA | - | 3510722 | 3510734 | -527 | -539 | |||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG373 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG360 | GGGCCTAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
| REG | ATTTGGGCCGAT | - | 3510765 | 3510776 | -570 | -581 | |||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG373 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG414 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG393 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG555 | GGGCCGAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||