PlantPromoterDB promoter information of AT3G11280
Summary of Gene (AT3G11280)
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Overview
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Focused view (chromosome 3: 3535393-3534194)
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Genome position
from initiation codon AT3G11280.2 AT3G11285.1 TSS from cDNA TSS information AT3G11280 5'->3' (-) Promoter sequence AT3G11285
AT3G11285.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G11280
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 3534809 | -416 |
| TSS peak | A | 17 | - | 3534498 | -105 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 3534808 | -415 |
| TSS clone | G | clone | - | 3534805 | -412 |
| TSS clone | C | clone | - | 3534749 | -356 |
| TSS clone | T | clone | - | 3534735 | -342 |
| TSS clone | C | clone | - | 3534497 | -104 |
| TSS clone | A | clone | - | 3534496 | -103 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTATATATAAAAG | - | 3534520 | 3534534 | -127 | -141 |
| Y Patch | TCTTCTCCTCTCTCTCT | - | 3534769 | 3534785 | -376 | -392 |
| Y Patch | TCTTCTTC | - | 3534796 | 3534803 | -403 | -410 |
| Y Patch | TCTCTCTCTCTTT | - | 3534810 | 3534822 | -417 | -429 |
| Y Patch | CTCTTCCTTC | - | 3534827 | 3534836 | -434 | -443 |
| Y Patch | CTCTTCTCTCTCT | - | 3534845 | 3534857 | -452 | -464 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGTGGGCTTTG | - | 3534750 | 3534760 | -357 | -367 | |||
| AtREG510 | AGTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG518 | GTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG559 | GGGCTTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||