PlantPromoterDB promoter information of AT3G11410.1
Summary of Gene (AT3G11410.1)
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Overview
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Focused view (chromosome 3: 3586649-3585450)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G11410.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G11410.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 10 | - | 3585790 | -141 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 3585791 | -142 |
| TSS clone | A | clone | - | 3585790 | -141 |
| TSS clone | T | clone | - | 3585789 | -140 |
| TSS clone | A | clone | - | 3585771 | -122 |
| TSS clone | A | clone | - | 3585770 | -121 |
| TSS clone | C | clone | - | 3585754 | -105 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTC | - | 3585741 | 3585748 | -92 | -99 |
| Y Patch | TCTCTCTCT | - | 3585756 | 3585764 | -107 | -115 |
| Y Patch | TTCTTCTTC | - | 3585832 | 3585840 | -183 | -191 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCGTTAATTACG | - | 3585885 | 3585898 | -236 | -249 | |||
| AtREG399 | GCCCGTTA | PPDB Motif | ACGGGC | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG646 | TAATTACG | ABA | PPDB Motif | PLACE Motif | |||||
| REG | CTGACGGT | - | 3585928 | 3585935 | -279 | -286 | |||
| AtREG625 | CTGACGGT | PPDB Motif | PLACE Motif | ||||||
| REG | TACGTGTCG | - | 3585953 | 3585961 | -304 | -312 | |||
| AtREG557 | TACGTGTC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG478 | ACGTGTCG | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | ACGGTTTAG | - | 3586004 | 3586012 | -355 | -363 | |||
| AtREG652 | ACGGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CACGTGTA | - | 3586039 | 3586046 | -390 | -397 | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| REG | AACGGCGT | - | 3586066 | 3586073 | -417 | -424 | |||
| AtREG497 | AACGGCGT | PPDB Motif | AAACG(C/G), CCAACGG | PLACE Motif | |||||
| REG | ATTGGGCCAC | - | 3586077 | 3586086 | -428 | -437 | |||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG445 | TGGGCCAC | PPDB Motif | GCCCA | PLACE Motif | GCCAC, GGGCC, TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||