PlantPromoterDB promoter information of AT3G11940.1
Summary of Gene (AT3G11940.1)
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Overview
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Focused view (chromosome 3: 3780354-3779155)
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Genome position
from initiation codon AT3G11945.1 AT3G11945.2 TSS from cDNA TSS information AT3G11940.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G11940.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 10 | - | 3779506 | -152 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 3779505 | -151 |
| TSS clone | C | clone | - | 3779503 | -149 |
| TSS clone | T | clone | - | 3779502 | -148 |
| TSS clone | T | clone | - | 3779500 | -146 |
| TSS clone | A | clone | - | 3779498 | -144 |
| TSS clone | A | clone | - | 3779497 | -143 |
| TSS clone | T | clone | - | 3779466 | -112 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATCTATATAAAAG | - | 3779530 | 3779543 | -176 | -189 |
| Y Patch | CGTCTCTCTCAT | - | 3779466 | 3779477 | -112 | -123 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GAGCCCAAAC | - | 3779555 | 3779564 | -201 | -210 | |||
| AtREG533 | GAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG469 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG474 | GCCCAAAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAGCCCAT | - | 3779581 | 3779589 | -227 | -235 | |||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | TTAAACCGGTTC | - | 3779609 | 3779620 | -255 | -266 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG528 | ACCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTAACCGG | - | 3779650 | 3779657 | -296 | -303 | |||
| AtREG501 | TTAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||