Summary of Gene (AT3G12090.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G12090.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 3853729 | -15 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 3853720 | -6 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCTT | - | 3853730 | 3853738 | -16 | -24 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATTG | - | 3853880 | 3853887 | -166 | -173 | |||
AtREG647 | CCCAATTG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 3866569 | AT3G12130.1 |
TSS clone | A | clone | - | 3866568 | AT3G12130.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACCGG | - | 3866612 | 3866619 | AT3G12130.1 | ||||
AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CCGGTTTAA | - | 3866632 | 3866640 | AT3G12130.1 | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ACTGGGCCAC | - | 3866642 | 3866651 | AT3G12130.1 | ||||
AtREG384 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG458 | CTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG445 | TGGGCCAC | PPDB Motif | GCCCA  | PLACE Motif | GCCAC, GGGCC, TGGGCY  | ||||
REG | TTCGGTTTAC | - | 3866666 | 3866675 | AT3G12130.1 | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG519 | CGGTTTAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTTCCGGTTTAT | - | 3866694 | 3866705 | AT3G12130.1 | ||||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ACGGCCCA | - | 3866720 | 3866727 | AT3G12130.1 | ||||
AtREG368 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | ACGTCATC | - | 3866773 | 3866780 | AT3G12130.1 | ||||
AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  |