PlantPromoterDB promoter information of AT3G12120.1
Summary of Gene (AT3G12120.1)
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Overview
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Focused view (chromosome 3: 3866643-3865444)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G12120.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G12120.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 2 | - | 3866530 | AT3G12130.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 3866569 | AT3G12130.1 |
| TSS clone | A | clone | - | 3866568 | AT3G12130.1 |
| TSS clone | C | clone | - | 3866558 | AT3G12130.1 |
| TSS clone | C | clone | - | 3866533 | AT3G12130.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCC | - | 3866483 | 3866490 | AT3G12130.1 | |
| Y Patch | TTCTCTCT | - | 3866522 | 3866529 | AT3G12130.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAACCGG | - | 3866612 | 3866619 | AT3G12130.1 | ||||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCGGTTTAA | - | 3866632 | 3866640 | AT3G12130.1 | ||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CTGGGCCAC | - | 3866642 | 3866650 | AT3G12130.1 | ||||
| AtREG458 | CTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG445 | TGGGCCAC | PPDB Motif | GCCCA | PLACE Motif | GCCAC, GGGCC, TGGGCY | ||||