PlantPromoterDB promoter information of AT3G12120.1

Summary of Gene (AT3G12120.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G12120 TAIR NCBI
Gene model	AT3G12120.1
Description	Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5.

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Overview

Focused view (chromosome 3: 3867393-3866194)

`Genome position from initiation codon` `AT3G12130.1 TSS from cDNA TSS information AT3G12120.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G12120.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 2 - 3866530 AT3G12130.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	2	-	3866530	AT3G12130.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 3866569 AT3G12130.1

TSS clone A clone - 3866568 AT3G12130.1

TSS clone C clone - 3866558 AT3G12130.1

TSS clone C clone - 3866533 AT3G12130.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	3866569	AT3G12130.1
TSS clone	`A`	clone	-	3866568	AT3G12130.1
TSS clone	`C`	clone	-	3866558	AT3G12130.1
TSS clone	`C`	clone	-	3866533	AT3G12130.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTCC - 3866483 3866490 AT3G12130.1

Y Patch TTCTCTCT - 3866522 3866529 AT3G12130.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTCC`	-	3866483	3866490	AT3G12130.1
Y Patch	`TTCTCTCT`	-	3866522	3866529	AT3G12130.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAACCGG - 3866612 3866619 AT3G12130.1

AtREG542 AAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

REG CCGGTTTAA - 3866632 3866640 AT3G12130.1

AtREG412 CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG473 CGGTTTAA PPDB Motif AACCG(G/A) PLACE Motif

REG ACTGGGCCAC - 3866642 3866651 AT3G12130.1

AtREG384 ACTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458 CTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG445   TGGGCCAC PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

REG TTCGGTTTAC - 3866666 3866675 AT3G12130.1

AtREG568 TTCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG519   CGGTTTAC PPDB Motif AACCG(G/A) PLACE Motif

REG TTTCCGGTTTAT - 3866694 3866705 AT3G12130.1

AtREG644 TTTCCGGT     PPDB Motif AACCG(G/A) PLACE Motif

AtREG534 TTCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   TCCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412    CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598     CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG ACGGCCCA - 3866720 3866727 AT3G12130.1

AtREG368 ACGGCCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ACGTCATC - 3866773 3866780 AT3G12130.1

AtREG578 ACGTCATC ABA PPDB Motif ACGT PLACE Motif ACGT