PlantPromoterDB promoter information of AT3G12250.4
Summary of Gene (AT3G12250.4)
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Overview
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Focused view (chromosome 3: 3905351-3906550)
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Genome position
from initiation codon AT3G12250.2 AT3G12250.3 AT3G12250.5 TSS from cDNA TSS information AT3G12250.4 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G12250.4
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 3905536 | -815 |
| TSS clone peak | T | clone | + | 3905543 | -808 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTTCTTCTT | + | 3905554 | 3905565 | -797 | -786 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAACCGGACCGGTT | + | 3905337 | 3905351 | -1014 | -1000 | |||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG552 | GACCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTGAACCGGTTCAA | + | 3905358 | 3905371 | -993 | -980 | |||
| AtREG528 | GAACCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG480 | TGAACCGGTTCA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG640 | TTGAACCGGTTCAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AGGGGTAA | + | 3905421 | 3905428 | -930 | -923 | |||
| AtREG642 | AGGGGTAA | PPDB Motif | ACCCCT | PLACE Motif | |||||
| REG | CCGTTAAA | + | 3905462 | 3905469 | -889 | -882 | |||
| AtREG610 | CCGTTAAA | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||