Summary of Gene (AT3G13450)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G13450 5'->3' (-) Promoter sequence AT3G13433.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | - | 4385265 | -970 |
TSS peak | G | 4 | - | 4385154 | -859 |
TSS peak | G | 4 | - | 4384392 | -97 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 4385242 | -947 |
TSS clone | A | clone | - | 4384434 | -139 |
TSS clone | C | clone | - | 4384433 | -138 |
TSS clone | C | clone | - | 4384424 | -129 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTCC | - | 4384379 | 4384386 | -84 | -91 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTGACGTGGCT | - | 4384485 | 4384495 | -190 | -200 | |||
AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG450 | ACGTGGCT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
REG | CCCAATAA | - | 4384533 | 4384540 | -238 | -245 | |||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTGTCGTTTTGA | - | 4384575 | 4384586 | -280 | -291 | |||
AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG653 | CGTTTTGA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |