PlantPromoterDB promoter information of AT3G13460.1
Summary of Gene (AT3G13460.1)
|
Overview
|
Focused view (chromosome 3: 4389220-4388021)
|
Genome position
from initiation codon AT3G13460.3 AT3G13460.4 TSS from cDNA TSS information AT3G13460.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G13460.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 13 | - | 4388459 | -239 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 4388501 | -281 |
| TSS clone | T | clone | - | 4388492 | -272 |
| TSS clone | A | clone | - | 4388488 | -268 |
| TSS clone | G | clone | - | 4388475 | -255 |
| TSS clone | T | clone | - | 4388473 | -253 |
| TSS clone | C | clone | - | 4388458 | -238 |
| TSS clone | G | clone | - | 4388417 | -197 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCCTTCT | - | 4388419 | 4388429 | -199 | -209 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TAATGGGCCTATT | + | 4389044 | 4389056 | AT3G13470.1 | ||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG362 | GGGCCTAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG424 | GGCCTATT | PPDB Motif | PLACE Motif | ||||||
| REG | ACAGGCCCAAAT | + | 4389074 | 4389085 | AT3G13470.1 | ||||
| AtREG433 | ACAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG370 | CAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG373 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG421 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACCGGAAA | + | 4389100 | 4389107 | AT3G13470.1 | ||||
| AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATCCAACGG | + | 4389175 | 4389183 | AT3G13470.1 | ||||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||