Summary of Gene (AT3G13672.2)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G13672.2 5'->3' (-) Promoter sequence AT3G13670.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 4474378 | -35 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTCCTCTTTC | - | 4474384 | 4474397 | -41 | -54 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATTG | - | 4474671 | 4474678 | -328 | -335 | |||
AtREG647 | CCCAATTG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 13 | + | 4469241 | AT3G13670.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 4469222 | AT3G13670.1 |
TSS clone | T | clone | + | 4469223 | AT3G13670.1 |
TSS clone | T | clone | + | 4469235 | AT3G13670.1 |
TSS clone | T | clone | + | 4469238 | AT3G13670.1 |
TSS clone | T | clone | + | 4469242 | AT3G13670.1 |
TSS clone | T | clone | + | 4469252 | AT3G13670.1 |
TSS clone | A | clone | + | 4469282 | AT3G13670.1 |
TSS clone | T | clone | + | 4469417 | AT3G13670.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTCTCTCC | + | 4469211 | 4469221 | AT3G13670.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CTGACGTGGCAT | + | 4469167 | 4469178 | AT3G13670.1 | ||||
AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  |