PlantPromoterDB promoter information of AT3G13750
Summary of Gene (AT3G13750)
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Overview
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Focused view (chromosome 3: 4510192-4511391)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G13750 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G13750
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 4510965 | -227 |
| TSS clone | A | clone | + | 4510967 | -225 |
| TSS clone | T | clone | + | 4510968 | -224 |
| TSS clone | G | clone | + | 4510971 | -221 |
| TSS clone peak | T | clone | + | 4511025 | -167 |
| TSS clone | A | clone | + | 4511045 | -147 |
| TSS clone | A | clone | + | 4511046 | -146 |
| TSS clone | A | clone | + | 4511055 | -137 |
| TSS clone | C | clone | + | 4511098 | -94 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTCTTCC | + | 4511082 | 4511092 | -110 | -100 |
| Y Patch | CTTCCTTCT | + | 4511101 | 4511109 | -91 | -83 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGACCCA | + | 4510872 | 4510881 | -320 | -311 | |||
| AtREG406 | GTGGGACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG596 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| REG | GGTCCCAC | + | 4510900 | 4510907 | -292 | -285 | |||
| AtREG406 | GGTCCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | AATACCCT | + | 4510911 | 4510918 | -281 | -274 | |||
| AtREG567 | AATACCCT | PPDB Motif | ACCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||