PlantPromoterDB promoter information of AT3G13920.2
Summary of Gene (AT3G13920.2)
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Overview
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Focused view (chromosome 3: 4595128-4593929)
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Genome position
from initiation codon AT3G13920.3 TSS from cDNA TSS information AT3G13920.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G13920.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 85 | - | 4594912 | -784 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 4594962 | -834 |
| TSS clone | C | clone | - | 4594919 | -791 |
| TSS clone | T | clone | - | 4594918 | -790 |
| TSS clone | T | clone | - | 4594916 | -788 |
| TSS clone | T | clone | - | 4594914 | -786 |
| TSS clone | C | clone | - | 4594913 | -785 |
| TSS clone | G | clone | - | 4594912 | -784 |
| TSS clone | G | clone | - | 4594911 | -783 |
| TSS clone | A | clone | - | 4594910 | -782 |
| TSS clone | T | clone | - | 4594909 | -781 |
| TSS clone | A | clone | - | 4594908 | -780 |
| TSS clone | T | clone | - | 4594907 | -779 |
| TSS clone | C | clone | - | 4594902 | -774 |
| TSS clone | C | clone | - | 4594882 | -754 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AGTATATAAACA | - | 4594942 | 4594953 | -814 | -825 |
| Y Patch | CTCTCTCT | - | 4594863 | 4594870 | -735 | -742 |
| Y Patch | CTCTTCTCTT | - | 4594873 | 4594882 | -745 | -754 |
| Y Patch | CCTCTTTC | - | 4594913 | 4594920 | -785 | -792 |
| Y Patch | TTTCTCTC | - | 4594923 | 4594930 | -795 | -802 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGGGGTAAAACCGGAAA | - | 4595004 | 4595020 | -876 | -892 | |||
| AtREG642 | AGGGGTAA | PPDB Motif | ACCCCT | PLACE Motif | |||||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||