PlantPromoterDB promoter information of AT3G14180.1

Summary of Gene (AT3G14180.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G14180 TAIR NCBI
Gene model	AT3G14180.1
Description	transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1); sequence-specific DNA binding / transcription factor (TAIR:AT1G54060.1); Has 259 Blast hits to 224 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 4; Plants - 220; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 4709621-4708422)

`Genome position from initiation codon` `AT3G14185 AT3G14185.1 TSS from cDNA TSS information AT3G14180.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G14180.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 4708882 -261

TSS clone peak C clone - 4708853 -232

TSS clone A clone - 4708848 -227

TSS clone C clone - 4708659 -38

TSS clone peak A clone - 4708658 -37

TSS clone C clone - 4708657 -36

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	4708882	-261
TSS clone peak	`C`	clone	-	4708853	-232
TSS clone	`A`	clone	-	4708848	-227
TSS clone	`C`	clone	-	4708659	-38
TSS clone peak	`A`	clone	-	4708658	-37
TSS clone	`C`	clone	-	4708657	-36

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCCCTCTTTC - 4708659 4708669 -38 -48

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCCCTCTTTC`	-	4708659	4708669	-38	-48
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTACCCCT - 4708705 4708712 -84 -91

AtREG642 TTACCCCT PPDB Motif ACCCCT PLACE Motif

REG GACGCCGT - 4708724 4708731 -103 -110

AtREG540 GACGCCGT PPDB Motif PLACE Motif

REG TTCCACGTGTCC - 4708744 4708755 -123 -134

AtREG627 TTCCACGT     PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG382   CCACGTGT   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG366    CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG472     ACGTGTCC ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG CACGTCATTCCACGTCATC - 4708777 4708795 -156 -174

AtREG483 CACGTCAT  CACGTCAT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG627        TTCCACGT     PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419          CCACGTCA   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG578            ACGTCATC ABA PPDB Motif ACGT PLACE Motif ACGT

REG TTACCCCTAAACCGA - 4708842 4708856 -221 -235

AtREG642 TTACCCCT        PPDB Motif ACCCCT PLACE Motif

AtREG511       CTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG514        TAAACCGA PPDB Motif AACCG(G/A) PLACE Motif

REG AGATGGGCTTTT - 4708920 4708931 -299 -310

AtREG572 AGATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG378   ATGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT PPDB Motif GCCCA PLACE Motif

REG ACCGGAAA - 4708972 4708979 -351 -358

AtREG644 ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG TAAGGGTA - 4708993 4709000 -372 -379

AtREG570 TAAGGGTA PPDB Motif ACCCT PLACE Motif

REG CTGACGGT - 4709006 4709013 -385 -392

AtREG625 CTGACGGT PPDB Motif PLACE Motif

REG ATCCACGTCAC - 4709133 4709143 -512 -522

AtREG547 ATCCACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419   CCACGTCA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG466    CACGTCAC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTACCCCT`		-	4708705	4708712	-84	-91
	AtREG642	`TTACCCCT`		PPDB Motif	`ACCCCT`	PLACE Motif
REG	`GACGCCGT`		-	4708724	4708731	-103	-110
	AtREG540	`GACGCCGT`		PPDB Motif		PLACE Motif
REG	`TTCCACGTGTCC`		-	4708744	4708755	-123	-134
	AtREG627	`TTCCACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG408	`TCCACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG382	`CCACGTGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG366	`CACGTGTC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG472	`ACGTGTCC`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
REG	`CACGTCATTCCACGTCATC`		-	4708777	4708795	-156	-174
	AtREG483	`CACGTCAT CACGTCAT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG627	`TTCCACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG419	`CCACGTCA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`
	AtREG578	`ACGTCATC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`TTACCCCTAAACCGA`		-	4708842	4708856	-221	-235
	AtREG642	`TTACCCCT`		PPDB Motif	`ACCCCT`	PLACE Motif
	AtREG511	`CTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG514	`TAAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`AGATGGGCTTTT`		-	4708920	4708931	-299	-310
	AtREG572	`AGATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACCGGAAA`		-	4708972	4708979	-351	-358
	AtREG644	`ACCGGAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TAAGGGTA`		-	4708993	4709000	-372	-379
	AtREG570	`TAAGGGTA`		PPDB Motif	`ACCCT`	PLACE Motif
REG	`CTGACGGT`		-	4709006	4709013	-385	-392
	AtREG625	`CTGACGGT`		PPDB Motif		PLACE Motif
REG	`ATCCACGTCAC`		-	4709133	4709143	-512	-522
	AtREG547	`ATCCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG419	`CCACGTCA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`
	AtREG466	`CACGTCAC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None