PlantPromoterDB promoter information of AT3G14310
Summary of Gene (AT3G14310)
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Overview
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Focused view (chromosome 3: 4776095-4774896)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G14310 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G14310
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 23 | - | 4775119 | -24 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 4775252 | -157 |
| TSS clone | A | clone | - | 4775251 | -156 |
| TSS clone | T | clone | - | 4775126 | -31 |
| TSS clone | A | clone | - | 4775119 | -24 |
| TSS clone | T | clone | - | 4775118 | -23 |
| TSS clone | A | clone | - | 4775116 | -21 |
| TSS clone | T | clone | - | 4775115 | -20 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATTATATAAACA | - | 4775142 | 4775153 | -47 | -58 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAAGCC | - | 4775203 | 4775210 | -108 | -115 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | AAAACGACA | - | 4775374 | 4775382 | -279 | -287 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||