PlantPromoterDB promoter information of AT3G14415

Summary of Gene (AT3G14415)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G14415 TAIR NCBI
Gene model	AT3G14415
Description	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, fruit, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14420.2); Has 8872 Blast hits to 8856 proteins in 1094 species: Archae - 112; Bacteria - 3084; Metazoa - 295; Fungi - 423; Plants - 161; Viruses - 0; Other Eukaryotes - 4797 (source: NCBI BLink).

#

Overview

Focused view (chromosome 3: 4817667-4818866)

`Genome position from initiation codon` `AT3G14415.1 TSS from cDNA TSS information AT3G14415 5'->3' (+) Promoter sequence AT3G14410.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G14415

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 + 4818232 -435

TSS peak A 47 + 4818486 -181

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	+	4818232	-435
TSS peak	`A`	47	+	4818486	-181

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 4818298 -369

TSS clone A clone + 4818382 -285

TSS clone T clone + 4818407 -260

TSS clone T clone + 4818433 -234

TSS clone T clone + 4818469 -198

TSS clone C clone + 4818478 -189

TSS clone A clone + 4818486 -181

TSS clone C clone + 4818498 -169

TSS clone T clone + 4818503 -164

TSS clone G clone + 4818509 -158

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	4818298	-369
TSS clone	`A`	clone	+	4818382	-285
TSS clone	`T`	clone	+	4818407	-260
TSS clone	`T`	clone	+	4818433	-234
TSS clone	`T`	clone	+	4818469	-198
TSS clone	`C`	clone	+	4818478	-189
TSS clone	`A`	clone	+	4818486	-181
TSS clone	`C`	clone	+	4818498	-169
TSS clone	`T`	clone	+	4818503	-164
TSS clone	`G`	clone	+	4818509	-158

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CCATATATAAAAG + 4818445 4818457 -222 -210

Y Patch CCTTCCTCTCTC + 4818497 4818508 -170 -159

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CCATATATAAAAG`	+	4818445	4818457	-222	-210
Y Patch	`CCTTCCTCTCTC`	+	4818497	4818508	-170	-159
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTGGGTCCCAC + 4818035 4818045 -632 -622

AtREG523 GTGGGTCC    PPDB Motif GGGACCC PLACE Motif

AtREG615 TGGGTCCC   ABA PPDB Motif GGGACCC PLACE Motif

AtREG596   GGGTCCCA PPDB Motif GGGACCC PLACE Motif

AtREG406    GGTCCCAC PPDB Motif GGGACCC PLACE Motif

REG TTATGGGCTTTT + 4818067 4818078 -600 -589

AtREG394 TTATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG477 TATGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   ATGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT PPDB Motif GCCCA PLACE Motif

REG TTAAAGCCCAAAT + 4818086 4818098 -581 -569

AtREG545 TTAAAGCC      PPDB Motif PLACE Motif

AtREG365 TAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469     AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421      GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG CAAGCCCAT + 4818133 4818141 -534 -526

AtREG525 CAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTGGGTCCCAC`		+	4818035	4818045	-632	-622
	AtREG523	`GTGGGTCC`		PPDB Motif	`GGGACCC`	PLACE Motif
	AtREG615	`TGGGTCCC`	ABA	PPDB Motif	`GGGACCC`	PLACE Motif
	AtREG596	`GGGTCCCA`		PPDB Motif	`GGGACCC`	PLACE Motif
	AtREG406	`GGTCCCAC`		PPDB Motif	`GGGACCC`	PLACE Motif
REG	`TTATGGGCTTTT`		+	4818067	4818078	-600	-589
	AtREG394	`TTATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG477	`TATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTAAAGCCCAAAT`		+	4818086	4818098	-581	-569
	AtREG545	`TTAAAGCC`		PPDB Motif		PLACE Motif
	AtREG365	`TAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG469	`AGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CAAGCCCAT`		+	4818133	4818141	-534	-526
	AtREG525	`CAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 4817980 AT3G14410.1

TSS clone peak A clone - 4817978 AT3G14410.1

TSS clone G clone - 4817964 AT3G14410.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	4817980	AT3G14410.1
TSS clone peak	`A`	clone	-	4817978	AT3G14410.1
TSS clone	`G`	clone	-	4817964	AT3G14410.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGGGACCCAC - 4818035 4818045 AT3G14410.1

AtREG406 GTGGGACC    PPDB Motif GGGACCC PLACE Motif

AtREG596 TGGGACCC   PPDB Motif GGGACCC PLACE Motif

AtREG615   GGGACCCA ABA PPDB Motif GGGACCC PLACE Motif

AtREG523    GGACCCAC PPDB Motif GGGACCC PLACE Motif

REG AAAAGCCCATAA - 4818067 4818078 AT3G14410.1

AtREG409 AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477    AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG394     GCCCATAA PPDB Motif GCCCA PLACE Motif

REG ATTTGGGCTTTAA - 4818086 4818098 AT3G14410.1

AtREG421 ATTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365     GGGCTTTA PPDB Motif GCCCA PLACE Motif

AtREG545      GGCTTTAA PPDB Motif PLACE Motif

REG ATGGGCTTG - 4818133 4818141 AT3G14410.1

AtREG378 ATGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG525 TGGGCTTG PPDB Motif GCCCA PLACE Motif TGGGCY