PlantPromoterDB promoter information of AT3G14660
Summary of Gene (AT3G14660)
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Overview
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Focused view (chromosome 3: 4924410-4925609)
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Genome position
from initiation codon AT3G14660.1 TSS from cDNA TSS information AT3G14660 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G14660
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 4924900 | -60 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 4924900 | -60 |
| TSS clone | T | clone | + | 4924903 | -57 |
| TSS clone | C | clone | + | 4924905 | -55 |
| TSS clone | T | clone | + | 4924925 | -35 |
| TSS clone | A | clone | + | 4924928 | -32 |
| TSS clone | C | clone | + | 4924929 | -31 |
| TSS clone | C | clone | + | 4924930 | -30 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCC | + | 4924874 | 4924881 | -86 | -79 |
| Y Patch | CCTCTCTCTCTCTCTCTCTC | + | 4924929 | 4924948 | -31 | -12 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAAAA | + | 4924811 | 4924818 | -149 | -142 | |||
| AtREG529 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCAGGGGT | + | 4924845 | 4924852 | -115 | -108 | |||
| AtREG595 | TCAGGGGT | CK | PPDB Motif | ACCCCT | PLACE Motif | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||