PlantPromoterDB promoter information of AT3G14680.1
Summary of Gene (AT3G14680.1)
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Overview
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Focused view (chromosome 3: 4933478-4934677)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G14680.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G14680.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | T | clone | + | 4934420 | -58 |
| TSS clone peak | A | clone | + | 4934421 | -57 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCC | + | 4934390 | 4934397 | -88 | -81 |
| Y Patch | TCTTTCTCTCTTCTT | + | 4934449 | 4934463 | -29 | -15 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTGGCAA | + | 4934326 | 4934333 | -152 | -145 | |||
| AtREG452 | CGTGGCAA | PPDB Motif | PLACE Motif | GCCAC | |||||
| REG | TCAGGGGT | + | 4934353 | 4934360 | -125 | -118 | |||
| AtREG595 | TCAGGGGT | CK | PPDB Motif | ACCCCT | PLACE Motif | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||