PlantPromoterDB promoter information of AT3G14890.1

Summary of Gene (AT3G14890.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G14890 TAIR NCBI
Gene model	AT3G14890.1
Description	phosphoesterase; FUNCTIONS IN: DNA binding, catalytic activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIIA (InterPro:IPR006549), Polynucleotide kinase 3 phosphatase, central region (InterPro:IPR013954), Zinc finger, PARP-type (InterPro:IPR001510), Polynucleotide kinase 3, phosphatase (InterPro:IPR015636), DNA 3-phosphatase (InterPro:IPR006551); BEST Arabidopsis thaliana protein match is: PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltransferase/ zinc ion binding (TAIR:AT2G31320.1); Has 1759 Blast hits to 1202 proteins in 196 species: Archae - 2; Bacteria - 25; Metazoa - 851; Fungi - 144; Plants - 126; Viruses - 44; Other Eukaryotes - 567 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 5000801-5002000)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G14890.1 5'->3' (+) Promoter sequence AT3G14860.1 AT3G14860.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G14890.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 5008742 -9

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	5008742	-9

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCCCTCT + 5008790 5008797 39 46

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCCCTCT`	+	5008790	5008797	39	46
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGTGTCT + 5008536 5008543 -215 -208

AtREG470 ACGTGTCT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG GTTAGGCCTTTAAAGCCCAAATAAGCCCAATG + 5008545 5008576 -206 -175

AtREG535 GTTAGGCC                         PPDB Motif PLACE Motif

AtREG467     GGCCTTTA                     PPDB Motif PLACE Motif

AtREG639      GCCTTTAA                    PPDB Motif AAACG(C/G) PLACE Motif

AtREG545          TTAAAGCC                PPDB Motif PLACE Motif

AtREG365           TAAAGCCC               PPDB Motif GCCCA PLACE Motif

AtREG376            AAAGCCCA              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407             AAGCCCAA  AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469              AGCCCAAA            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421               GCCCAAAT           PPDB Motif GCCCA PLACE Motif

AtREG462                     ATAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG426                      TAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402                        AGCCCAAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG461                         GCCCAATG PPDB Motif GCCCA PLACE Motif

REG TTGGCCCAAAC + 5008604 5008614 -147 -137

AtREG484 TTGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420 TGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373   GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG474    GCCCAAAC PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGTGTCT`		+	5008536	5008543	-215	-208
	AtREG470	`ACGTGTCT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
REG	`GTTAGGCCTTTAAAGCCCAAATAAGCCCAATG`		+	5008545	5008576	-206	-175
	AtREG535	`GTTAGGCC`		PPDB Motif		PLACE Motif
	AtREG467	`GGCCTTTA`		PPDB Motif		PLACE Motif
	AtREG639	`GCCTTTAA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG545	`TTAAAGCC`		PPDB Motif		PLACE Motif
	AtREG365	`TAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG469	`AGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG462	`ATAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG426	`TAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG461	`GCCCAATG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TTGGCCCAAAC`		+	5008604	5008614	-147	-137
	AtREG484	`TTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG474	`GCCCAAAC`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 2 - 5000978 AT3G14860.1, AT3G14860.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	2	-	5000978	AT3G14860.1, AT3G14860.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone - 5001046 AT3G14860.1, AT3G14860.2

TSS clone T clone - 5001018 AT3G14860.1, AT3G14860.2

TSS clone A clone - 5001006 AT3G14860.1, AT3G14860.2

TSS clone G clone - 5000981 AT3G14860.1, AT3G14860.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	-	5001046	AT3G14860.1, AT3G14860.2
TSS clone	`T`	clone	-	5001018	AT3G14860.1, AT3G14860.2
TSS clone	`A`	clone	-	5001006	AT3G14860.1, AT3G14860.2
TSS clone	`G`	clone	-	5000981	AT3G14860.1, AT3G14860.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCCAATAAG - 5001082 5001090 AT3G14860.1, AT3G14860.2

AtREG417 CCCAATAA PPDB Motif GCCCA PLACE Motif

AtREG611 CCAATAAG PPDB Motif PLACE Motif

REG CTTAATGGGCCTATTATAAGGCCCATAA - 5001104 5001131 AT3G14860.1, AT3G14860.2

AtREG604 CTTAATGG                     PPDB Motif PLACE Motif TTAATGG

AtREG396 TTAATGGG                    PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357   TAATGGGC                   PPDB Motif GCCCA PLACE Motif

AtREG361    AATGGGCC                  PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358      TGGGCCTA                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG362       GGGCCTAT               PPDB Motif GCCCA PLACE Motif GGGCC

AtREG424        GGCCTATT              PPDB Motif PLACE Motif

AtREG425                ATAAGGCC      PPDB Motif AACCG(G/A) PLACE Motif

AtREG351                 TAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353                  AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354     ATGGGCCT      AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364                    GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG394                     GCCCATAA PPDB Motif GCCCA PLACE Motif

REG TAAATGGGC - 5001150 5001158 AT3G14860.1, AT3G14860.2

AtREG443 TAAATGGG PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC PPDB Motif GCCCA PLACE Motif

REG GTGGCCCAGT - 5001189 5001198 AT3G14860.1, AT3G14860.2

AtREG445 GTGGCCCA   PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

AtREG458 TGGCCCAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG384   GGCCCAGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GGCTTTTT - 5001249 5001256 AT3G14860.1, AT3G14860.2

AtREG589 GGCTTTTT PPDB Motif PLACE Motif