Summary of Gene (AT3G14890.1)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G14890.1 5'->3' (+) Promoter sequence AT3G14900.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 5008742 | -9 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCCTCT | + | 5008790 | 5008797 | 39 | 46 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTGTCT | + | 5008536 | 5008543 | -215 | -208 | |||
AtREG470 | ACGTGTCT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
REG | GTTAGGCCTTTAAAGCCCAAATAAGCCCAATG | + | 5008545 | 5008576 | -206 | -175 | |||
AtREG535 | GTTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG467 | GGCCTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG545 | TTAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTGGCCCAAAC | + | 5008604 | 5008614 | -147 | -137 | |||
AtREG484 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG373 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG474 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |