PlantPromoterDB promoter information of AT3G14990

Summary of Gene (AT3G14990)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G14990 TAIR NCBI
Gene model	AT3G14990
Description	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: response to cadmium ion, thiamin biosynthetic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT1G53280.1); Has 6214 Blast hits to 3737 proteins in 1037 species: Archae - 210; Bacteria - 4967; Metazoa - 446; Fungi - 43; Plants - 170; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 5046510-5047709)

`Genome position from initiation codon` `AT3G14990.1 AT3G14990.2 AT3G14990.3 TSS from cDNA TSS information AT3G14990 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G14990

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 49 + 5047451 -59

TSS peak C 2 + 5047681 171

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	49	+	5047451	-59
TSS peak	`C`	2	+	5047681	171

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 5047400 -110

TSS clone A clone + 5047403 -107

TSS clone C clone + 5047447 -63

TSS clone T clone + 5047448 -62

TSS clone C clone + 5047449 -61

TSS clone A clone + 5047451 -59

TSS clone C clone + 5047452 -58

TSS clone T clone + 5047453 -57

TSS clone C clone + 5047460 -50

TSS clone T clone + 5047472 -38

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	5047400	-110
TSS clone	`A`	clone	+	5047403	-107
TSS clone	`C`	clone	+	5047447	-63
TSS clone	`T`	clone	+	5047448	-62
TSS clone	`C`	clone	+	5047449	-61
TSS clone	`A`	clone	+	5047451	-59
TSS clone	`C`	clone	+	5047452	-58
TSS clone	`T`	clone	+	5047453	-57
TSS clone	`C`	clone	+	5047460	-50
TSS clone	`T`	clone	+	5047472	-38

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCCT + 5047405 5047412 -105 -98

Y Patch CTCCTTTCTTCTCC + 5047437 5047450 -73 -60

Y Patch TCTCTTTCTTCTT + 5047464 5047476 -46 -34

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCCT`	+	5047405	5047412	-105	-98
Y Patch	`CTCCTTTCTTCTCC`	+	5047437	5047450	-73	-60
Y Patch	`TCTCTTTCTTCTT`	+	5047464	5047476	-46	-34
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GGCTTTTT + 5047216 5047223 -294 -287

AtREG589 GGCTTTTT PPDB Motif PLACE Motif

REG ATGACGTGGAA + 5047242 5047252 -268 -258

AtREG483 ATGACGTG    PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419 TGACGTGG   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG627    ACGTGGAA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG TCGCCACGT + 5047270 5047278 -240 -232

AtREG471 TCGCCACG ABA PPDB Motif PLACE Motif GCCAC

AtREG371 CGCCACGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

REG CGACACGTA + 5047295 5047303 -215 -207

AtREG478 CGACACGT ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG557 GACACGTA ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG ACGTCATC + 5047331 5047338 -179 -172

AtREG578 ACGTCATC ABA PPDB Motif ACGT PLACE Motif ACGT

REG CCCATTAG + 5047424 5047431 -86 -79

AtREG558 CCCATTAG PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GGCTTTTT`		+	5047216	5047223	-294	-287
	AtREG589	`GGCTTTTT`		PPDB Motif		PLACE Motif
REG	`ATGACGTGGAA`		+	5047242	5047252	-268	-258
	AtREG483	`ATGACGTG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG419	`TGACGTGG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`
	AtREG627	`ACGTGGAA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`TCGCCACGT`		+	5047270	5047278	-240	-232
	AtREG471	`TCGCCACG`	ABA	PPDB Motif		PLACE Motif	`GCCAC`
	AtREG371	`CGCCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
REG	`CGACACGTA`		+	5047295	5047303	-215	-207
	AtREG478	`CGACACGT`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG557	`GACACGTA`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
REG	`ACGTCATC`		+	5047331	5047338	-179	-172
	AtREG578	`ACGTCATC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`CCCATTAG`		+	5047424	5047431	-86	-79
	AtREG558	`CCCATTAG`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None