PlantPromoterDB promoter information of AT3G15290.1

Summary of Gene (AT3G15290.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G15290 TAIR NCBI
Gene model	AT3G15290.1
Description	3-hydroxybutyryl-CoA dehydrogenase, putative; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, 3-hydroxybutyryl-CoA dehydrogenase activity, binding, catalytic activity; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108); BEST Arabidopsis thaliana protein match is: AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (TAIR:AT4G29010.1); Has 10012 Blast hits to 9491 proteins in 1060 species: Archae - 201; Bacteria - 5136; Metazoa - 507; Fungi - 164; Plants - 85; Viruses - 0; Other Eukaryotes - 3919 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 5144054-5145253)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G15290.1 5'->3' (+) Promoter sequence AT3G15280.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G15290.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 17 + 5144995 -59

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	17	+	5144995	-59

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 5145012 -42

TSS clone A clone + 5145014 -40

TSS clone A clone + 5145019 -35

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	5145012	-42
TSS clone	`A`	clone	+	5145014	-40
TSS clone	`A`	clone	+	5145019	-35

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCCATTAT + 5144713 5144720 -341 -334

AtREG546 CCCATTAT PPDB Motif PLACE Motif

REG CGACACGTGGAC + 5144799 5144810 -255 -244

AtREG478 CGACACGT     ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366 GACACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG382   ACACGTGG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG408    CACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG513     ACGTGGAC ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ACGACACGT + 5144817 5144825 -237 -229

AtREG428 ACGACACG ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

AtREG478 CGACACGT ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG CGACACGTG + 5144849 5144857 -205 -197

AtREG478 CGACACGT ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366 GACACGTG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

REG TTATTGGGCCGTT + 5144882 5144894 -172 -160

AtREG417 TTATTGGG      PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414    TTGGGCCG   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG368     TGGGCCGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG377      GGGCCGTT PPDB Motif GCCCA, AAACG(C/G) PLACE Motif GGGCC

REG GGCCCGTT + 5144905 5144912 -149 -142

AtREG401 GGCCCGTT PPDB Motif AAACG(C/G), ACGGGC, CCAACGG PLACE Motif GGGCC

REG TTTAGGCCCATTAT + 5144920 5144933 -134 -121

AtREG430 TTTAGGCC       PPDB Motif PLACE Motif

AtREG360 TTAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358   TAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361     GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357      GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG546       CCCATTAT PPDB Motif PLACE Motif

REG TAGGGCCCAGT + 5144941 5144951 -113 -103

AtREG387 TAGGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG400 AGGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG363   GGGCCCAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG384    GGCCCAGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCCATTAT`		+	5144713	5144720	-341	-334
	AtREG546	`CCCATTAT`		PPDB Motif		PLACE Motif
REG	`CGACACGTGGAC`		+	5144799	5144810	-255	-244
	AtREG478	`CGACACGT`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG366	`GACACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG382	`ACACGTGG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG408	`CACGTGGA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG513	`ACGTGGAC`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`ACGACACGT`		+	5144817	5144825	-237	-229
	AtREG428	`ACGACACG`	ABA, DREB1Aox, Ethylene, Drought	PPDB Motif		PLACE Motif
	AtREG478	`CGACACGT`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
REG	`CGACACGTG`		+	5144849	5144857	-205	-197
	AtREG478	`CGACACGT`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG366	`GACACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
REG	`TTATTGGGCCGTT`		+	5144882	5144894	-172	-160
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG414	`TTGGGCCG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG368	`TGGGCCGT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG377	`GGGCCGTT`		PPDB Motif	`GCCCA, AAACG(C/G)`	PLACE Motif	`GGGCC`
REG	`GGCCCGTT`		+	5144905	5144912	-149	-142
	AtREG401	`GGCCCGTT`		PPDB Motif	`AAACG(C/G), ACGGGC, CCAACGG`	PLACE Motif	`GGGCC`
REG	`TTTAGGCCCATTAT`		+	5144920	5144933	-134	-121
	AtREG430	`TTTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG546	`CCCATTAT`		PPDB Motif		PLACE Motif
REG	`TAGGGCCCAGT`		+	5144941	5144951	-113	-103
	AtREG387	`TAGGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG400	`AGGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG363	`GGGCCCAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG384	`GGCCCAGT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTCCACGTGTCG - 5144799 5144810 AT3G15280.1

AtREG513 GTCCACGT     ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG382   CCACGTGT   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG366    CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG478     ACGTGTCG ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG ACGTGTCGT - 5144817 5144825 AT3G15280.1

AtREG478 ACGTGTCG ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG428 CGTGTCGT ABA, DREB1Aox, Ethylene, Drought PPDB Motif PLACE Motif

REG CACGTGTCG - 5144849 5144857 AT3G15280.1

AtREG366 CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG478 ACGTGTCG ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG AACGGCCCAATAA - 5144882 5144894 AT3G15280.1

AtREG377 AACGGCCC      PPDB Motif GCCCA, AAACG(C/G) PLACE Motif GGGCC

AtREG368 ACGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414   CGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352    GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355     GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417      CCCAATAA PPDB Motif GCCCA PLACE Motif

REG AACGGGCC - 5144905 5144912 AT3G15280.1

AtREG401 AACGGGCC PPDB Motif AAACG(C/G), ACGGGC, CCAACGG PLACE Motif GGGCC

REG ATAATGGGCCTAAA - 5144920 5144933 AT3G15280.1

AtREG546 ATAATGGG       PPDB Motif PLACE Motif

AtREG357 TAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358     TGGGCCTA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360      GGGCCTAA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG430       GGCCTAAA PPDB Motif PLACE Motif

REG ACTGGGCCCTA - 5144941 5144951 AT3G15280.1

AtREG384 ACTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG363 CTGGGCCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG400   TGGGCCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG387    GGGCCCTA PPDB Motif GCCCA PLACE Motif GGGCC