PlantPromoterDB promoter information of AT3G15360.1
Summary of Gene (AT3G15360.1)
|
Overview
|
Focused view (chromosome 3: 5187448-5188647)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G15360.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G15360.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 57 | + | 5188415 | -33 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGTCGGTC | + | 5188258 | 5188265 | -190 | -183 | |||
| AtREG638 | AGTCGGTC | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
| REG | ACGGTTTAC | + | 5188280 | 5188288 | -168 | -160 | |||
| AtREG652 | ACGGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG519 | CGGTTTAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATGACGTGGCGA | + | 5188328 | 5188339 | -120 | -109 | |||
| AtREG483 | ATGACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG388 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG371 | ACGTGGCG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG471 | CGTGGCGA | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||