PlantPromoterDB promoter information of AT3G15640
Summary of Gene (AT3G15640)
|
Overview
|
Focused view (chromosome 3: 5298273-5299472)
|
Genome position
from initiation codon AT3G15640.2 TSS from cDNA TSS information AT3G15640 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G15640
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | + | 5299204 | -69 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 5299128 | -145 |
| TSS clone | C | clone | + | 5299129 | -144 |
| TSS clone | A | clone | + | 5299133 | -140 |
| TSS clone | A | clone | + | 5299134 | -139 |
| TSS clone | A | clone | + | 5299144 | -129 |
| TSS clone | C | clone | + | 5299272 | -1 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGACACGTGTG | + | 5299042 | 5299052 | -231 | -221 | |||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | TCACACGTACCGGTTAA | + | 5299065 | 5299081 | -208 | -192 | |||
| AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||