PlantPromoterDB promoter information of AT3G15660.2
Summary of Gene (AT3G15660.2)
|
Overview
|
Focused view (chromosome 3: 5310383-5309184)
|
Genome position
from initiation codon AT3G15670.1 TSS from cDNA TSS information AT3G15660.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G15660.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 8 | - | 5309516 | -133 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 5309556 | -173 |
| TSS clone | G | clone | - | 5309553 | -170 |
| TSS clone | C | clone | - | 5309518 | -135 |
| TSS clone | A | clone | - | 5309493 | -110 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCTCTCT | - | 5309481 | 5309488 | -98 | -105 |
| Y Patch | CCTTCTTCCTC | - | 5309496 | 5309506 | -113 | -123 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGACACGACGTCGTT | - | 5309571 | 5309586 | -188 | -203 | |||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| AtREG431 | ACGACGTCGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG493 | ACGTCGTT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| REG | GAAACGACATCG | - | 5309611 | 5309622 | -228 | -239 | |||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| AtREG630 | CGACATCG | PPDB Motif | PLACE Motif | ||||||
| REG | CTAAACCGA | - | 5309678 | 5309686 | -295 | -303 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||