PlantPromoterDB promoter information of AT3G15950.2
Summary of Gene (AT3G15950.2)
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Overview
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Focused view (chromosome 3: 5403610-5402411)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G15950.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G15950.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 94 | - | 5402646 | -36 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 5402652 | -42 |
| TSS clone | A | clone | - | 5402651 | -41 |
| TSS clone | A | clone | - | 5402650 | -40 |
| TSS clone | C | clone | - | 5402647 | -37 |
| TSS clone | A | clone | - | 5402646 | -36 |
| TSS clone | G | clone | - | 5402645 | -35 |
| TSS clone | T | clone | - | 5402642 | -32 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAAGCCACGT | - | 5402705 | 5402716 | -95 | -106 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG608 | AAGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| REG | TAAAAGCCACGTG | - | 5402734 | 5402746 | -124 | -136 | |||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG608 | AAGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| REG | ACGTGGAA | - | 5402759 | 5402766 | -149 | -156 | |||
| AtREG627 | ACGTGGAA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||