PlantPromoterDB promoter information of AT3G16260.1
Summary of Gene (AT3G16260.1)
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Overview
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Focused view (chromosome 3: 5508397-5509596)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G16260.1 5'->3' (+) Promoter sequence AT3G16250.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G16260.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 5509374 | -23 |
| TSS clone peak | T | clone | + | 5509375 | -22 |
| TSS clone | C | clone | + | 5509382 | -15 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGATGGGCCGG | + | 5509257 | 5509267 | -140 | -130 | |||
| AtREG635 | TGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG403 | GATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG380 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG457 | TGGGCCGG | CK | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | |||
| REG | CAAAGGCCCATGGGCTAA | + | 5509278 | 5509295 | -119 | -102 | |||
| AtREG656 | CAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG504 | GGCCCATG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG591 | CCCATGGG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| AtREG507 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| AtREG581 | ATGGGCTA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG571 | TGGGCTAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 5508411 | AT3G16250.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATATAAAAC | - | 5508398 | 5508407 | AT3G16250.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CTAAACCGG | - | 5508471 | 5508479 | AT3G16250.1 | ||||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCCAATAT | - | 5508548 | 5508555 | AT3G16250.1 | ||||
| AtREG509 | CCCAATAT | PPDB Motif | PLACE Motif | ||||||