Summary of Gene (AT3G16270.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G16270.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 5513334 | -367 |
TSS peak | A | 4 | + | 5513364 | -337 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 5513325 | -376 |
TSS clone | T | clone | + | 5513331 | -370 |
TSS clone | T | clone | + | 5513335 | -366 |
TSS clone | C | clone | + | 5513365 | -336 |
TSS clone | T | clone | + | 5513519 | -182 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCCTTCTTTCTCT | + | 5513342 | 5513356 | -359 | -345 |
Y Patch | TTTCTTCTC | + | 5513381 | 5513389 | -320 | -312 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTGACA | + | 5513085 | 5513092 | -616 | -609 | |||
AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 5509374 | AT3G16260.1 |
TSS clone peak | T | clone | + | 5509375 | AT3G16260.1 |
TSS clone | C | clone | + | 5509382 | AT3G16260.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGATGGGCCGG | + | 5509257 | 5509267 | AT3G16260.1 | ||||
AtREG635 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG403 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG457 | TGGGCCGG | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
REG | CAAAGGCCCATGGGCTAA | + | 5509278 | 5509295 | AT3G16260.1 | ||||
AtREG656 | CAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG504 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG591 | CCCATGGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG507 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG581 | ATGGGCTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |