PlantPromoterDB promoter information of AT3G16460
Summary of Gene (AT3G16460)
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Overview
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Focused view (chromosome 3: 5592029-5593228)
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Genome position
from initiation codon AT3G16460.2 TSS from cDNA TSS information AT3G16460 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G16460
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 196 | + | 5592620 | -409 |
| TSS peak | A | 5 | + | 5593012 | -17 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 5592582 | -447 |
| TSS clone | T | clone | + | 5592590 | -439 |
| TSS clone | G | clone | + | 5592604 | -425 |
| TSS clone | C | clone | + | 5592608 | -421 |
| TSS clone | T | clone | + | 5592617 | -412 |
| TSS clone | A | clone | + | 5592620 | -409 |
| TSS clone | C | clone | + | 5592621 | -408 |
| TSS clone | C | clone | + | 5592623 | -406 |
| TSS clone | C | clone | + | 5592624 | -405 |
| TSS clone | A | clone | + | 5592626 | -403 |
| TSS clone | G | clone | + | 5593019 | -10 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATATAGA | + | 5592587 | 5592595 | -442 | -434 |
| Y Patch | CCTCTCTT | + | 5592608 | 5592615 | -421 | -414 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAGTCAA | + | 5592356 | 5592363 | -673 | -666 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | TTGACTTT | + | 5592787 | 5592794 | -242 | -235 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | GAACCGGAT | + | 5592904 | 5592912 | -125 | -117 | |||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||