PlantPromoterDB promoter information of AT3G16530
Summary of Gene (AT3G16530)
|
Overview
|
Focused view (chromosome 3: 5621416-5620217)
|
Genome position
from initiation codon AT3G16520.2 AT3G16520.3 TSS from cDNA TSS information AT3G16530 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G16530
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 5625470 | -54 |
| TSS clone peak | T | clone | - | 5625469 | -53 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCCTTATATAAACA | - | 5625495 | 5625508 | -79 | -92 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTAGGCCC | - | 5625611 | 5625618 | -195 | -202 | |||
| AtREG475 | CTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | - | 5620887 | AT3G16520.1, AT3G16520.3, AT3G16520.2 |
| TSS clone peak | T | clone | - | 5620854 | AT3G16520.1, AT3G16520.3, AT3G16520.2 |
| TSS clone | C | clone | - | 5620851 | AT3G16520.1, AT3G16520.3, AT3G16520.2 |
| TSS clone | A | clone | - | 5620850 | AT3G16520.1, AT3G16520.3, AT3G16520.2 |
| TSS clone | A | clone | - | 5620849 | AT3G16520.1, AT3G16520.3, AT3G16520.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACGTGTGA | - | 5620903 | 5620910 | AT3G16520.1, AT3G16520.2, AT3G16520.3 | ||||
| AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||