Summary of Gene (AT3G16640.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G16640.1 5'->3' (-) Promoter sequence AT3G16650.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 102 | - | 5670809 | -80 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 5670816 | -87 |
TSS clone | C | clone | - | 5670815 | -86 |
TSS clone | C | clone | - | 5670814 | -85 |
TSS clone | C | clone | - | 5670813 | -84 |
TSS clone | C | clone | - | 5670812 | -83 |
TSS clone | T | clone | - | 5670811 | -82 |
TSS clone | G | clone | - | 5670809 | -80 |
TSS clone | T | clone | - | 5670808 | -79 |
TSS clone | C | clone | - | 5670805 | -76 |
TSS clone | T | clone | - | 5670804 | -75 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ACTATAAATA | - | 5670842 | 5670851 | -113 | -122 |
Y Patch | CGTCTCTCTCCC | - | 5670791 | 5670802 | -62 | -73 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTAAAGCCCAAAA | - | 5670906 | 5670918 | -177 | -189 | |||
AtREG545 | TTAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG529 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCGTTGGA | - | 5671006 | 5671013 | -277 | -284 | |||
AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | AGCCCAACA | - | 5671027 | 5671035 | -298 | -306 | |||
AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG543 | GCCCAACA | PPDB Motif | GCCCA  | PLACE Motif | CAACA  | ||||
REG | CCGACCCGAA | - | 5671050 | 5671059 | -321 | -330 | |||
AtREG375 | CCGACCCG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG383 | CGACCCGA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG597 | GACCCGAA | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | T | clone | + | 5671081 | AT3G16650.1 |
TSS clone peak | T | clone | + | 5671100 | AT3G16650.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCCTCTCTTCTCTTCC | + | 5671072 | 5671089 | AT3G16650.1 | |
Y Patch | TCTTTCTC | + | 5671091 | 5671098 | AT3G16650.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTTTGGGCTTTAA | + | 5670906 | 5670918 | AT3G16650.1 | ||||
AtREG529 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCCAACGG | + | 5671006 | 5671013 | AT3G16650.1 | ||||
AtREG554 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | TGTTGGGCT | + | 5671027 | 5671035 | AT3G16650.1 | ||||
AtREG543 | TGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif | CAACA  | ||||
AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
REG | TTCGGGTCGG | + | 5671050 | 5671059 | AT3G16650.1 | ||||
AtREG597 | TTCGGGTC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
AtREG383 | TCGGGTCG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG375 | CGGGTCGG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  |