Summary of Gene (AT3G16720)
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Overview |
Genome position
from initiation codon AT3G16700.2 AT3G16710.1 TSS from cDNA TSS information AT3G16720 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 28 | + | 5692823 | -57 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 5692766 | -114 |
TSS clone | C | clone | + | 5692824 | -56 |
TSS clone | G | clone | + | 5692827 | -53 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCCTTC | + | 5692815 | 5692822 | -65 | -58 |
Y Patch | CTCTCTTTC | + | 5692832 | 5692840 | -48 | -40 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTCGCGCG | + | 5692695 | 5692702 | -185 | -178 | |||
AtREG512 | CTCGCGCG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | GGCGTCGT | + | 5692711 | 5692718 | -169 | -162 | |||
AtREG537 | GGCGTCGT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |