PlantPromoterDB promoter information of AT3G16720
Summary of Gene (AT3G16720)
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Overview
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Focused view (chromosome 3: 5692930-5694129)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G16720 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G16720
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 28 | + | 5692823 | -57 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 5692766 | -114 |
| TSS clone | C | clone | + | 5692824 | -56 |
| TSS clone | G | clone | + | 5692827 | -53 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCCTTC | + | 5692815 | 5692822 | -65 | -58 |
| Y Patch | CTCTCTTTC | + | 5692832 | 5692840 | -48 | -40 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTCGCGCG | + | 5692695 | 5692702 | -185 | -178 | |||
| AtREG512 | CTCGCGCG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | GGCGTCGT | + | 5692711 | 5692718 | -169 | -162 | |||
| AtREG537 | GGCGTCGT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||