PlantPromoterDB promoter information of AT3G17660.1
Summary of Gene (AT3G17660.1)
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Overview
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Focused view (chromosome 3: 6037167-6038366)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G17660.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G17660.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 6037598 | -119 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GATATAAAAG | + | 6037563 | 6037572 | -154 | -145 |
| Y Patch | TTTCTCTCCTCTCCTTC | + | 6037595 | 6037611 | -122 | -106 |
| Y Patch | TTCTTCCT | + | 6037619 | 6037626 | -98 | -91 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAATTGGG | + | 6037427 | 6037434 | -290 | -283 | |||
| AtREG647 | CAATTGGG | PPDB Motif | PLACE Motif | ||||||
| REG | GTCGGGTT | + | 6037471 | 6037478 | -246 | -239 | |||
| AtREG580 | GTCGGGTT | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||