Summary of Gene (AT3G17660.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G17660.1 5'->3' (+) Promoter sequence AT3G17675.1
AT3G17680.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 6037598 | -119 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GATATAAAAG | + | 6037563 | 6037572 | -154 | -145 |
Y Patch | TTTCTCTCCTCTCCTTC | + | 6037595 | 6037611 | -122 | -106 |
Y Patch | TTCTTCCT | + | 6037619 | 6037626 | -98 | -91 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAATTGGG | + | 6037427 | 6037434 | -290 | -283 | |||
AtREG647 | CAATTGGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | GTCGGGTT | + | 6037471 | 6037478 | -246 | -239 | |||
AtREG580 | GTCGGGTT | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |