PlantPromoterDB promoter information of AT3G17820
Summary of Gene (AT3G17820)
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Overview
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Focused view (chromosome 3: 6096503-6097702)
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Genome position
from initiation codon AT3G17820.1 TSS from cDNA TSS information AT3G17820 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G17820
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 31 | + | 6097448 | -55 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 6097419 | -84 |
| TSS clone | T | clone | + | 6097447 | -56 |
| TSS clone | T | clone | + | 6097449 | -54 |
| TSS clone | G | clone | + | 6097451 | -52 |
| TSS clone | A | clone | + | 6097452 | -51 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTCTATAAACA | + | 6097413 | 6097424 | -90 | -79 |
| Y Patch | CTCTTTCTCT | + | 6097408 | 6097417 | -95 | -86 |
| Y Patch | CGTCTTCTCTTTC | + | 6097454 | 6097466 | -49 | -37 |
| Y Patch | TTTCTCTCC | + | 6097485 | 6097493 | -18 | -10 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTAATTA | + | 6097372 | 6097379 | -131 | -124 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||