PlantPromoterDB promoter information of AT3G18080

Summary of Gene (AT3G18080)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G18080 TAIR NCBI
Gene model	AT3G18080
Description	B-S GLUCOSIDASE 44 (BGLU44); FUNCTIONS IN: in 6 functions; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosolic ribosome, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU43 (BETA GLUCOSIDASE 43); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G18070.1); Has 5752 Blast hits to 5520 proteins in 798 species: Archae - 100; Bacteria - 3116; Metazoa - 606; Fungi - 134; Plants - 855; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 6200186-6201385)

`Genome position from initiation codon` `AT3G18090.1 AT3G18100.1 AT3G18100.2 TSS from cDNA TSS information AT3G18080 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G18080

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 26 + 6191564 -22

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	26	+	6191564	-22

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 6191559 -27

TSS clone A clone + 6191564 -22

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	6191559	-27
TSS clone	`A`	clone	+	6191564	-22

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box GCCTATAAATA + 6191525 6191535 -61 -51

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GCCTATAAATA`	+	6191525	6191535	-61	-51
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GGCTTTTA + 6191514 6191521 -72 -65

AtREG549 GGCTTTTA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GGCTTTTA`		+	6191514	6191521	-72	-65
	AtREG549	`GGCTTTTA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 6200600 AT3G18100.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	6200600	AT3G18100.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 6200563 AT3G18100.1

TSS clone T clone + 6200564 AT3G18100.1

TSS clone A clone + 6200578 AT3G18100.1

TSS clone T clone + 6200582 AT3G18100.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	6200563	AT3G18100.1
TSS clone	`T`	clone	+	6200564	AT3G18100.1
TSS clone	`A`	clone	+	6200578	AT3G18100.1
TSS clone	`T`	clone	+	6200582	AT3G18100.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTTCTTCTTCT + 6200580 6200593 AT3G18100.1

Y Patch TTTCTCTCAT + 6200622 6200631 AT3G18100.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTTCTTCTTCT`	+	6200580	6200593	AT3G18100.1
Y Patch	`TTTCTCTCAT`	+	6200622	6200631	AT3G18100.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTTAACCG + 6200396 6200403 AT3G18100.1

AtREG645 TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG TAACCGGTTTAT + 6200449 6200460 AT3G18100.1

AtREG503 TAACCGGT     PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG436   ACCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412    CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598     CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG CCCGGCCCGTT + 6200500 6200510 AT3G18100.1

AtREG404 CCCGGCCC    CK PPDB Motif GCCCA PLACE Motif GGGCC

AtREG401    GGCCCGTT PPDB Motif AAACG(C/G), ACGGGC, CCAACGG PLACE Motif GGGCC