PlantPromoterDB promoter information of AT3G18210.1

Summary of Gene (AT3G18210.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G18210 TAIR NCBI
Gene model	AT3G18210.1
Description	oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT1G22950.1); Has 311 Blast hits to 310 proteins in 60 species: Archae - 0; Bacteria - 16; Metazoa - 224; Fungi - 0; Plants - 36; Viruses - 3; Other Eukaryotes - 32 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 6241396-6240197)

`Genome position from initiation codon` `AT3G18210.2 TSS from cDNA TSS information AT3G18210.1 5'->3' (-) Promoter sequence AT3G18215.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G18210.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 - 6240522 -126

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	-	6240522	-126

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 6240605 -209

TSS clone T clone - 6240599 -203

TSS clone T clone - 6240558 -162

TSS clone A clone - 6240555 -159

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	6240605	-209
TSS clone	`T`	clone	-	6240599	-203
TSS clone	`T`	clone	-	6240558	-162
TSS clone	`A`	clone	-	6240555	-159

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AGATGGGCTA - 6240655 6240664 -259 -268

AtREG572 AGATGGGC   PPDB Motif GCCCA PLACE Motif

AtREG581   ATGGGCTA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TTAATGGGCCG - 6240671 6240681 -275 -285

AtREG396 TTAATGGG    PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357 TAATGGGC   PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG380    ATGGGCCG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ATAACCGGTTCG - 6240688 6240699 -292 -303

AtREG548 ATAACCGG     PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG503 TAACCGGT    PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG528    ACCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

AtREG423     CCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

REG TATACCGG - 6240719 6240726 -323 -330

AtREG629 TATACCGG PPDB Motif PLACE Motif

REG TCACGTGTT - 6240781 6240789 -385 -393

AtREG628 TCACGTGT DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG590 CACGTGTT ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AGATGGGCTA`		-	6240655	6240664	-259	-268
	AtREG572	`AGATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG581	`ATGGGCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`TTAATGGGCCG`		-	6240671	6240681	-275	-285
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG357	`TAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG361	`AATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG380	`ATGGGCCG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`ATAACCGGTTCG`		-	6240688	6240699	-292	-303
	AtREG548	`ATAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG503	`TAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG528	`ACCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG423	`CCGGTTCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TATACCGG`		-	6240719	6240726	-323	-330
	AtREG629	`TATACCGG`		PPDB Motif		PLACE Motif
REG	`TCACGTGTT`		-	6240781	6240789	-385	-393
	AtREG628	`TCACGTGT`	DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG590	`CACGTGTT`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 5 + 6240811 AT3G18215.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	5	+	6240811	AT3G18215.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone + 6240850 AT3G18215.1

TSS clone T clone + 6240885 AT3G18215.1

TSS clone G clone + 6240900 AT3G18215.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	+	6240850	AT3G18215.1
TSS clone	`T`	clone	+	6240885	AT3G18215.1
TSS clone	`G`	clone	+	6240900	AT3G18215.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCCTCT + 6240803 6240810 AT3G18215.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCCTCT`	+	6240803	6240810	AT3G18215.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TAGCCCATCT + 6240655 6240664 AT3G18215.1

AtREG581 TAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG572   GCCCATCT PPDB Motif GCCCA PLACE Motif

REG CGGCCCATTAA + 6240671 6240681 AT3G18215.1

AtREG380 CGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361 GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357   GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG396    CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG

REG CGAACCGGTTAT + 6240688 6240699 AT3G18215.1

AtREG423 CGAACCGG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG528 GAACCGGT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG503    ACCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG548     CCGGTTAT PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CCGGTATA + 6240719 6240726 AT3G18215.1

AtREG629 CCGGTATA PPDB Motif PLACE Motif