PlantPromoterDB promoter information of AT3G18270.1
Summary of Gene (AT3G18270.1)
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Overview
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Focused view (chromosome 3: 6261010-6262209)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G18270.1 5'->3' (+) Promoter sequence AT3G18260.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G18270.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 6261922 | -88 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 6261911 | -99 |
| TSS clone | T | clone | + | 6261923 | -87 |
| TSS clone | G | clone | + | 6261940 | -70 |
| TSS clone | A | clone | + | 6261941 | -69 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCATTTA | + | 6261726 | 6261733 | -284 | -277 | |||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCGGTATA | + | 6261812 | 6261819 | -198 | -191 | |||
| AtREG629 | CCGGTATA | PPDB Motif | PLACE Motif | ||||||
| REG | GACCCGAA | + | 6261826 | 6261833 | -184 | -177 | |||
| AtREG597 | GACCCGAA | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CTAAACCGT | + | 6261842 | 6261850 | -168 | -160 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| REG | TTGAACCGAACCGGTTTAT | + | 6261857 | 6261875 | -153 | -135 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG528 | GAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||