Summary of Gene (AT3G18780.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G18780.1 5'->3' (+) Promoter sequence AT3G18779.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 294 | + | 6474912 | -623 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 6474885 | -650 |
TSS clone | T | clone | + | 6474902 | -633 |
TSS clone | C | clone | + | 6474903 | -632 |
TSS clone | G | clone | + | 6474907 | -628 |
TSS clone | C | clone | + | 6474908 | -627 |
TSS clone | T | clone | + | 6474909 | -626 |
TSS clone | A | clone | + | 6474913 | -622 |
TSS clone | A | clone | + | 6474914 | -621 |
TSS clone | T | clone | + | 6474915 | -620 |
TSS clone | G | clone | + | 6474917 | -618 |
TSS clone | T | clone | + | 6474918 | -617 |
TSS clone | C | clone | + | 6474919 | -616 |
TSS clone | T | clone | + | 6474920 | -615 |
TSS clone | G | clone | + | 6474922 | -613 |
TSS clone | T | clone | + | 6474923 | -612 |
TSS clone | G | clone | + | 6474925 | -610 |
TSS clone | T | clone | + | 6474926 | -609 |
TSS clone | T | clone | + | 6474941 | -594 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CGCCTATATAAATT | + | 6474876 | 6474889 | -659 | -646 |
Y Patch | TTCCTCTCC | + | 6474898 | 6474906 | -637 | -629 |
Y Patch | TCCTCCTC | + | 6474926 | 6474933 | -609 | -602 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCGGTTTAA | + | 6474617 | 6474625 | -918 | -910 | |||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |