PlantPromoterDB promoter information of AT3G18780.1
Summary of Gene (AT3G18780.1)
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Overview
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Focused view (chromosome 3: 6478535-6479734)
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Genome position
from initiation codon AT3G18800.1 TSS from cDNA TSS information AT3G18780.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G18780.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 294 | + | 6474912 | -623 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 6474885 | -650 |
| TSS clone | T | clone | + | 6474902 | -633 |
| TSS clone | C | clone | + | 6474903 | -632 |
| TSS clone | G | clone | + | 6474907 | -628 |
| TSS clone | C | clone | + | 6474908 | -627 |
| TSS clone | T | clone | + | 6474909 | -626 |
| TSS clone | A | clone | + | 6474913 | -622 |
| TSS clone | A | clone | + | 6474914 | -621 |
| TSS clone | T | clone | + | 6474915 | -620 |
| TSS clone | G | clone | + | 6474917 | -618 |
| TSS clone | T | clone | + | 6474918 | -617 |
| TSS clone | C | clone | + | 6474919 | -616 |
| TSS clone | T | clone | + | 6474920 | -615 |
| TSS clone | G | clone | + | 6474922 | -613 |
| TSS clone | T | clone | + | 6474923 | -612 |
| TSS clone | G | clone | + | 6474925 | -610 |
| TSS clone | T | clone | + | 6474926 | -609 |
| TSS clone | T | clone | + | 6474941 | -594 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGCCTATATAAATT | + | 6474876 | 6474889 | -659 | -646 |
| Y Patch | TTCCTCTCC | + | 6474898 | 6474906 | -637 | -629 |
| Y Patch | TCCTCCTC | + | 6474926 | 6474933 | -609 | -602 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGGTTTAA | + | 6474617 | 6474625 | -918 | -910 | |||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | + | 6479697 | AT3G18800.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | + | 6479675 | AT3G18800.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CATCTCTC | + | 6479701 | 6479708 | AT3G18800.1 | |
| Y Patch | TTTCTCTCTTCTC | + | 6479724 | 6479736 | AT3G18800.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GACCGTTG | + | 6479628 | 6479635 | AT3G18800.1 | ||||
| AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||