PlantPromoterDB promoter information of AT3G18780.2
Summary of Gene (AT3G18780.2)
|
Overview
|
Focused view (chromosome 3: 6477635-6478834)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G18780.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G18780.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 294 | + | 6474912 | -623 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 6474885 | -650 |
| TSS clone | T | clone | + | 6474902 | -633 |
| TSS clone | C | clone | + | 6474903 | -632 |
| TSS clone | G | clone | + | 6474907 | -628 |
| TSS clone | C | clone | + | 6474908 | -627 |
| TSS clone | T | clone | + | 6474909 | -626 |
| TSS clone | A | clone | + | 6474913 | -622 |
| TSS clone | A | clone | + | 6474914 | -621 |
| TSS clone | T | clone | + | 6474915 | -620 |
| TSS clone | G | clone | + | 6474917 | -618 |
| TSS clone | T | clone | + | 6474918 | -617 |
| TSS clone | C | clone | + | 6474919 | -616 |
| TSS clone | T | clone | + | 6474920 | -615 |
| TSS clone | G | clone | + | 6474922 | -613 |
| TSS clone | T | clone | + | 6474923 | -612 |
| TSS clone | G | clone | + | 6474925 | -610 |
| TSS clone | T | clone | + | 6474926 | -609 |
| TSS clone | T | clone | + | 6474941 | -594 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGCCTATATAAATT | + | 6474876 | 6474889 | -659 | -646 |
| Y Patch | TTCCTCTCC | + | 6474898 | 6474906 | -637 | -629 |
| Y Patch | TCCTCCTC | + | 6474926 | 6474933 | -609 | -602 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGGTTTAA | + | 6474617 | 6474625 | -918 | -910 | |||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 8 | + | 6477731 | AT3G18790.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 6477699 | AT3G18790.1 |
| TSS clone | A | clone | + | 6477738 | AT3G18790.1 |
| TSS clone | A | clone | + | 6477739 | AT3G18790.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTCTTCC | + | 6477701 | 6477712 | AT3G18790.1 | |
| Y Patch | CGTCTCTCCTTCTC | + | 6477714 | 6477727 | AT3G18790.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||