Summary of Gene (AT3G18790.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G18790.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 6477731 | -122 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 6477699 | -154 |
TSS clone | A | clone | + | 6477738 | -115 |
TSS clone | A | clone | + | 6477739 | -114 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTCTCTTCC | + | 6477701 | 6477712 | -152 | -141 |
Y Patch | CGTCTCTCCTTCTC | + | 6477714 | 6477727 | -139 | -126 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAGTCAA | + | 6477486 | 6477493 | -367 | -360 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | CTTGGGCCCTA | + | 6477532 | 6477542 | -321 | -311 | |||
AtREG505 | CTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG400 | TGGGCCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG387 | GGGCCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TATATGGGCTAA | + | 6477578 | 6477589 | -275 | -264 | |||
AtREG620 | TATATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG432 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG477 | TATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG581 | ATGGGCTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | AATTGGGCCTTAG | + | 6477592 | 6477604 | -261 | -249 | |||
AtREG418 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG577 | GGCCTTAG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 6466223 | AT3G18773.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |