Summary of Gene (AT3G18830.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G18830.1 5'->3' (-) Promoter sequence AT3G18827
AT3G18827.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 15 | - | 6491273 | -64 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 6491273 | -64 |
TSS clone | T | clone | - | 6491272 | -63 |
TSS clone | G | clone | - | 6491270 | -61 |
TSS clone | T | clone | - | 6491269 | -60 |
TSS clone | A | clone | - | 6491267 | -58 |
TSS clone | G | clone | - | 6491266 | -57 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTCTATATAAGA | - | 6491297 | 6491308 | -88 | -99 |
Y Patch | TCTCTCTCTC | - | 6491228 | 6491237 | -19 | -28 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGCCGTTT | - | 6491476 | 6491483 | -267 | -274 | |||
AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |