Summary of Gene (AT3G19290.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G19290.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 6687140 | -816 |
TSS clone | G | clone | + | 6687158 | -798 |
TSS clone | G | clone | + | 6687169 | -787 |
TSS clone peak | T | clone | + | 6687170 | -786 |
TSS clone | A | clone | + | 6687231 | -725 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTCTCCC | + | 6687171 | 6687180 | -785 | -776 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCACGTCG | + | 6686969 | 6686976 | -987 | -980 | |||
AtREG465 | CCACGTCG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
REG | GTCCACGT | + | 6687039 | 6687046 | -917 | -910 | |||
AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | GGGCCTTAA | + | 6687124 | 6687132 | -832 | -824 | |||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG416 | GGCCTTAA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |