PlantPromoterDB promoter information of AT3G19290.1
Summary of Gene (AT3G19290.1)
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Overview
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Focused view (chromosome 3: 6686956-6688155)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G19290.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G19290.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 6687140 | -816 |
| TSS clone | G | clone | + | 6687158 | -798 |
| TSS clone | G | clone | + | 6687169 | -787 |
| TSS clone peak | T | clone | + | 6687170 | -786 |
| TSS clone | A | clone | + | 6687231 | -725 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CGTCTCTCCC | + | 6687171 | 6687180 | -785 | -776 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCACGTCG | + | 6686969 | 6686976 | -987 | -980 | |||
| AtREG465 | CCACGTCG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | GTCCACGT | + | 6687039 | 6687046 | -917 | -910 | |||
| AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | GGGCCTTAA | + | 6687124 | 6687132 | -832 | -824 | |||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG416 | GGCCTTAA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||