Summary of Gene (AT3G19400.1)
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Overview |
Genome position
from initiation codon AT3G19420.1 TSS from cDNA TSS information AT3G19400.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | + | 6725468 | -42 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 6725468 | -42 |
TSS clone | A | clone | + | 6725469 | -41 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTTCTT | + | 6725448 | 6725456 | -62 | -54 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTGACA | + | 6725337 | 6725344 | -173 | -166 | |||
AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 6731376 | AT3G19420.1 |
TSS clone peak | T | clone | + | 6731451 | AT3G19420.1 |
TSS clone | G | clone | + | 6731457 | AT3G19420.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTCTCCC | + | 6731447 | 6731456 | AT3G19420.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CGTTGGAT | + | 6731322 | 6731329 | AT3G19420.1 | ||||
AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CCCACGTGAC | + | 6731386 | 6731395 | AT3G19420.1 | ||||
AtREG464 | CCCACGTG | ABA, Auxin, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | |||
AtREG583 | CACGTGAC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  |