PlantPromoterDB promoter information of AT3G19580
Summary of Gene (AT3G19580)
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Overview
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Focused view (chromosome 3: 6805114-6803915)
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Genome position
from initiation codon AT3G19580.2 TSS from cDNA TSS information AT3G19580 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G19580
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 6804233 | -119 |
| TSS clone | C | clone | - | 6804232 | -118 |
| TSS clone peak | T | clone | - | 6804231 | -117 |
| TSS clone | C | clone | - | 6804227 | -113 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCCATATAAAAA | - | 6804260 | 6804271 | -146 | -157 |
| Y Patch | TTCCTTCTCTCT | - | 6804207 | 6804218 | -93 | -104 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTGCCACG | - | 6804277 | 6804284 | -163 | -170 | |||
| AtREG468 | CTGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | GACCGACTTA | - | 6804294 | 6804303 | -180 | -189 | |||
| AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
| AtREG582 | CCGACTTA | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||