PlantPromoterDB promoter information of AT3G20220

Summary of Gene (AT3G20220)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G20220 TAIR NCBI
Gene model	AT3G20220
Description	auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G38840.1); Has 616 Blast hits to 608 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 615; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 7055910-7057109)

`Genome position from initiation codon` `AT3G20240.1 TSS from cDNA TSS information AT3G20220 5'->3' (+) Promoter sequence AT3G20230.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G20220

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 7054828 -232

TSS clone peak A clone + 7054829 -231

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	7054828	-232
TSS clone peak	`A`	clone	+	7054829	-231

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CATATAAAAG + 7054794 7054803 -266 -257

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CATATAAAAG`	+	7054794	7054803	-266	-257
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCCAATAA + 7054745 7054752 -315 -308

AtREG417 CCCAATAA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCCAATAA`		+	7054745	7054752	-315	-308
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak T clone + 7057011 AT3G20240.1

TSS clone peak A clone + 7057049 AT3G20240.1

TSS clone G clone - 7056756 AT3G20230.1

TSS clone peak A clone - 7056699 AT3G20230.1

TSS clone C clone - 7056698 AT3G20230.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`T`	clone	+	7057011	AT3G20240.1
TSS clone peak	`A`	clone	+	7057049	AT3G20240.1
TSS clone	`G`	clone	-	7056756	AT3G20230.1
TSS clone peak	`A`	clone	-	7056699	AT3G20230.1
TSS clone	`C`	clone	-	7056698	AT3G20230.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTTCTTC + 7057000 7057007 AT3G20240.1

Y Patch TCTTTCTC - 7056700 7056707 AT3G20230.1

Y Patch CTTTCTCC - 7056722 7056729 AT3G20230.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTTCTTC`	+	7057000	7057007	AT3G20240.1
Y Patch	`TCTTTCTC`	-	7056700	7056707	AT3G20230.1
Y Patch	`CTTTCTCC`	-	7056722	7056729	AT3G20230.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGAACCGGAT + 7056819 7056828 AT3G20240.1

AtREG480 TGAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG579 GAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG561   AACCGGAT PPDB Motif AACCG(G/A) PLACE Motif

REG GCGTTTTGA + 7056900 7056908 AT3G20240.1

AtREG585 GCGTTTTG PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG653 CGTTTTGA PPDB Motif AAACG(C/G) PLACE Motif

REG ATCCGGTTCA - 7056819 7056828 AT3G20230.1

AtREG561 ATCCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG579 TCCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

AtREG480   CCGGTTCA PPDB Motif AACCG(G/A) PLACE Motif

REG TCAAAACGC - 7056900 7056908 AT3G20230.1

AtREG653 TCAAAACG PPDB Motif AAACG(C/G) PLACE Motif

AtREG585 CAAAACGC PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC