Summary of Gene (AT3G20220)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G20220 5'->3' (+) Promoter sequence AT3G20230.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 7054828 | -232 |
TSS clone peak | A | clone | + | 7054829 | -231 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CATATAAAAG | + | 7054794 | 7054803 | -266 | -257 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATAA | + | 7054745 | 7054752 | -315 | -308 | |||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | T | clone | + | 7057011 | AT3G20240.1 |
TSS clone peak | A | clone | + | 7057049 | AT3G20240.1 |
TSS clone | G | clone | - | 7056756 | AT3G20230.1 |
TSS clone peak | A | clone | - | 7056699 | AT3G20230.1 |
TSS clone | C | clone | - | 7056698 | AT3G20230.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTC | - | 7056700 | 7056707 | AT3G20230.1 | |
Y Patch | CTTTCTCC | - | 7056722 | 7056729 | AT3G20230.1 | |
Y Patch | CTTTCTTC | + | 7057000 | 7057007 | AT3G20240.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATCCGGTTCA | - | 7056819 | 7056828 | AT3G20230.1 | ||||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG480 | CCGGTTCA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TCAAAACGC | - | 7056900 | 7056908 | AT3G20230.1 | ||||
AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
REG | TGAACCGGAT | + | 7056819 | 7056828 | AT3G20240.1 | ||||
AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GCGTTTTGA | + | 7056900 | 7056908 | AT3G20240.1 | ||||
AtREG585 | GCGTTTTG | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
AtREG653 | CGTTTTGA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |